intergenic_variant [SO_0001628]

A sequence variant located in the intergenic region, between genes.

intergenic_variant

ID: SO_0001628

Class

A sequence variant located in the intergenic region, between genes.

EBI term Intergenic variations - More than 5 kb either upstream or downstream of a transcript.

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Classification

feature_variant

Alternative Names

Synonym	Scope	Reference
ANNOVAR:intergenic	related synonym	//www.openbioinformatics.org/annovar/annovar_download.html, VAR
VEP:intergenic_variant	exact synonym	VAR
intergenic	exact synonym	//ensembl.org/info/docs/variation/index.html
Jannovar:intergenic_variant	exact synonym	//doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
snpEff:INTERGENIC	exact synonym	VAR
intergenic variant	exact synonym
Seattleseq:intergenic	exact synonym	VAR

References

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], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "intergenic variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "Seattleseq:intergenic", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "snpEff:INTERGENIC", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_related_synonym", "label": "ANNOVAR:intergenic", "type": "http://purl.obolibrary.org/obo/so#VAR" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [] }

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