stop_gained SO_0001587
stop_gained
ID: SO_0001587
Class
A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide.
EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).
Open in VFB 3D Browser →Classification
Alternative Names
| Synonym | Scope | Reference |
|---|---|---|
| stop codon gained | related synonym | |
| nonsense codon | exact synonym | |
| VEP:stop_gained | exact synonym | VAR |
| snpEff:STOP_GAINED | exact synonym | VAR |
| ANNOVAR:stopgain | exact synonym | //www.openbioinformatics.org/annovar/annovar_download.html |
| stop gained | exact synonym | //ensembl.org/info/docs/variation/index.html |
| Jannovar:stop_gained | exact synonym | //doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html |
| VAAST:stop_gained | exact synonym | VAR |
| Seattleseq:stop-gained | exact synonym | VAR |
| nonsense | exact synonym | //ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd |
| VAT:prematureStop | exact synonym | VAR |
| Seattleseq:stop-gained-near-splice | related synonym | VAR |