VFB Content Report

An auto generated report detailing the current types and quantity of images and annotations currently publicly available on VFB. This will update after a new data release.

VFB Content Report 2024-07-17

Report of content found at http://pdb.virtualflybrain.org on Wed, 17 Jul 2024 00:50:03

Ontology Content

Anatomy Classes Publications
All Terms 24421 1647
All Nervous System Parts 17924 1155
All Neurons 14247 860
Characterised Neurons 6603 859
Provisional Neurons 7644 13
All Nervous System Regions 1438 254
Synaptic Neuropils 635 144
Neuron Projection Bundles 593 129
Cell Body Rinds 132 8
Sense Organs 861 163

127057 formal assertions, of which 52635 are SubClassOf assertions and 74422 are other relationship types

113291 formal assertions on nervous system components, of which 44609 are SubClassOf assertions and 68682 are other relationship types

Image Content
(excludes hemibrain v1.0.1)

156790 total images from 109 datasets
78709 single neuron images of 5968 cell types
43699 images of expression patterns of 16879 drivers
2738 images of expression patterns of 579 split combinations
50803 images of expression pattern fragments of 4792 drivers

Annotations

338162 annotations recording 4159 types of anatomical structure that 17948 specific driver lines are expressed in.
273811 annotations recording 3056 parts of the nervous system that 15243 specific driver lines are expressed in.
46850 annotations recording 2026 types of neuron that 5402 specific driver lines are expressed in.
9802 annotations recording 793 types of neuron that 1901 specific split combinations are expressed in.

Connectivity

Neuron Number of Neurons Input/Output Entity Number of Entities Connections
Any neuron (individuals) 30777 Any neuron (individuals) 30777 3499052
Any neuron (individuals) 22585 Region (individuals) 218 299683
Any neuron (classes) 324 Muscle (classes) 227 248
Any neuron (classes) 770 Sense organ (classes) 433 535

Content by Template
(excludes hemibrain v1.0.1)

Template Name Datasets Images Single Neurons EM Neurons Full Expression Patterns Split Expression Patterns Partial Expression Patterns Painted domains
Adult Head (McKellar2020) 1 18 0 0 0 0 0 0
adult VNS template - Court2018 10 3209 1 0 3185 486 0 22
JRC_FlyEM_Hemibrain 2 22701 22588 22587 0 0 0 114
JRC2018Unisex 68 101021 45870 29074 32160 1633 38796 46
L1 larval CNS ssTEM - Cardona/Janelia 24 5019 5019 5019 0 0 0 0
JRC2018UnisexVNC 22 44363 25789 2029 8314 625 10240 23780
adult brain template Ito2014 1 75 1 0 0 0 0 75
L3 CNS template - Wood2018 3 2032 1412 0 0 0 1773 255
Adult T1 Leg (Kuan2020) 2 678 464 0 0 0 0 4
adult brain template JFRC2 21 41940 16316 0 25272 600 16127 58