VFB connect API overview

The VFB connect API provides programmatic access to the databases underlying Virtual Fly Brain.

At the core of Virtual Fly Brain is a set of curated terms for Drosophila neuro-anatomy organised into a queryable classification, including terms for brain regions, e.g. nodulus and neurons e.g. MBON01. These terms are used to annotate and classify individual brain regions and neurons in images and connectomics data. For example the term MBON01 is used to classify individual neurons from sources including the CATMAID-FAFB and Neuprint-HemiBrain databases. VFB stores both registered 3D images and connectomics data (where available) for all of these neurons.

A single VfbConnect object wraps database connections and canned queries against all open VFB databases. It includes methods for retreiving metadata about anatomy, individual brain regions and neurons including IDs for these that can be used for queries against other databases (e.g. CATMAID & neuprint). It provides methods for downloading images and connectomics data. It provides access to sophisticated queries for anatomical classes and individual neurons according to their classification & properties.

Locations for methods under a `VfbConnect` object.

Under vc.neo_query_wrapper are
1. A set of methods that take lists of IDs as a primary argument and return metadata.
2. A set of methods for mapping between VFB IDs and external IDs
Directly under vc are:
1. A set of methods that take the names of classes in VFB e.g. ’nodulus’ or ‘Kenyon cell’, or simple query expressions using the names of classes and return metadata about the classes.
2. A set methods for querying connectivity and similarity
Direct access to API queries is provided under the ’nc’ and ‘oc’ attributes for Neo4J and OWL queries respectively. We will not cover details of how to use these here.

Note: available methods and their documentation are easy to explore in DeepNote. Tab completion and type adhead can be used to help find methods. Float your cursor over a method to see its signature and docstring.

1. `vc.neo_query_wrapper` methods overview

1.1 vc.neo_query_wrapper TermInfo queries return the results of a VFB Term Information window as JSON, following the VFB_JSON standard, or a summary that can easily be converted into a DataFrame.

# A query for full TermInfo.  This probably produces more information than you will need for most purposes.

vc.neo_query_wrapper.get_type_TermInfo(['FBbt_00003686'])


    [{'term': {'core': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003686',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'Kenyon cell',
        'short_form': 'FBbt_00003686'},
       'description': ['Intrinsic neuron of the mushroom body. They have tightly-packed cell bodies, situated in the rind above the calyx of the mushroom body (Ito et al., 1997). Four short fascicles, one per lineage, extend from the cell bodies of the Kenyon cells into the calyx (Ito et al., 1997). These 4 smaller fascicles converge in the calyx where they arborize and form pre- and post-synaptic terminals (Christiansen et al., 2011), with different Kenyon cells receiving input in different calyx regions/accessory calyces (Tanaka et al., 2008). They emerge from the calyx as a thick axon bundle referred to as the peduncle that bifurcates to innervate the dorsal and medial lobes of the mushroom body (Tanaka et al., 2008).'],
       'comment': ['Pre-synaptic terminals were identified using two presynaptic markers (Brp and Dsyd-1) and post-synaptic terminals by labelling a subunit of the acetylcholine receptor (Dalpha7) in genetically labelled Kenyon cells (Christiansen et al., 2011).']},
      'query': 'Get JSON for Class',
      'version': '44725ae',
      'parents': [{'iri': 'http://purl.obolibrary.org/obo/FBbt_00001366',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'supraesophageal ganglion neuron',
        'short_form': 'FBbt_00001366'},
       {'iri': 'http://purl.obolibrary.org/obo/FBbt_00007484',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'mushroom body intrinsic neuron',
        'short_form': 'FBbt_00007484'}],
      'relationships': [{'relation': {'type': 'develops_from',
         'iri': 'http://purl.obolibrary.org/obo/RO_0002202',
         'label': 'develops from'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00007113',
         'symbol': '',
         'types': ['Entity',
          'Anatomy',
          'Nervous_system',
          'Cell',
          'Neuroblast',
          'Class'],
         'label': 'mushroom body neuroblast',
         'short_form': 'FBbt_00007113'}},
       {'relation': {'type': 'overlaps',
         'iri': 'http://purl.obolibrary.org/obo/RO_0002131',
         'label': 'overlaps'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003687',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_domain',
          'Class'],
         'label': 'mushroom body pedunculus',
         'short_form': 'FBbt_00003687'}},
       {'relation': {'type': 'part_of',
         'iri': 'http://purl.obolibrary.org/obo/BFO_0000050',
         'label': 'is part of'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00005801',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_block',
          'Class'],
         'label': 'mushroom body',
         'short_form': 'FBbt_00005801'}},
       {'relation': {'type': 'receives_synaptic_input_in',
         'iri': 'http://purl.obolibrary.org/obo/RO_0013002',
         'label': 'receives synaptic input in'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003685',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_domain',
          'Class'],
         'label': 'mushroom body calyx',
         'short_form': 'FBbt_00003685'}}],
      'xrefs': [],
      'anatomy_channel_image': [{'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwig',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 5812981989_c',
          'short_form': 'VFBc_jrchjwig'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwig/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwig',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 5812981989',
         'short_form': 'VFB_jrchjwig'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwig',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 5812981989_c',
          'short_form': 'VFBc_jrchjwig'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101384',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC_FlyEM_Hemibrain_c',
           'short_form': 'VFBc_00101384'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101384',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC_FlyEM_Hemibrain',
           'short_form': 'VFB_00101384'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwig/VFB_00101384/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwig',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 5812981989',
         'short_form': 'VFB_jrchjwig'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwih',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 1392655948_c',
          'short_form': 'VFBc_jrchjwih'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwih/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwih',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 1392655948',
         'short_form': 'VFB_jrchjwih'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwih',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 1392655948_c',
          'short_form': 'VFBc_jrchjwih'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101384',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC_FlyEM_Hemibrain_c',
           'short_form': 'VFBc_00101384'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101384',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC_FlyEM_Hemibrain',
           'short_form': 'VFB_00101384'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwih/VFB_00101384/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwih',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 1392655948',
         'short_form': 'VFB_jrchjwih'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwii',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 785918963_c',
          'short_form': 'VFBc_jrchjwii'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwii/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwii',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 785918963',
         'short_form': 'VFB_jrchjwii'}}],
      'pub_syn': [{'pub': {'core': {'iri': 'http://flybase.org/reports/Unattributed',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': '',
          'short_form': 'Unattributed'},
         'FlyBase': '',
         'PubMed': '',
         'DOI': ''},
        'synonym': {'type': '', 'label': 'KC', 'scope': 'has_exact_synonym'}},
       {'pub': {'core': {'iri': 'http://flybase.org/reports/FBrf0236359',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': 'Eichler et al., 2017, Nature 548(7666): 175--182',
          'short_form': 'FBrf0236359'},
         'FlyBase': 'FBrf0236359',
         'PubMed': '28796202',
         'DOI': '10.1038/nature23455'},
        'synonym': {'type': '',
         'label': 'mature Kenyon cell',
         'scope': 'has_exact_synonym'}},
       {'pub': {'core': {'iri': 'http://flybase.org/reports/FBrf0111409',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': 'Lee et al., 1999, Development 126(18): 4065--4076',
          'short_form': 'FBrf0111409'},
         'FlyBase': '',
         'PubMed': '10457015',
         'DOI': ''},
        'synonym': {'type': '',
         'label': 'MB neuron',
         'scope': 'has_narrow_synonym'}}],
      'def_pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0214059',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Christiansen et al., 2011, J. Neurosci. 31(26): 9696--9707',
         'short_form': 'FBrf0214059'},
        'FlyBase': '',
        'PubMed': '21715635',
        'DOI': '10.1523/JNEUROSCI.6542-10.2011'},
       {'core': {'iri': 'http://flybase.org/reports/FBrf0092568',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Ito et al., 1997, Development 124(4): 761--771',
         'short_form': 'FBrf0092568'},
        'FlyBase': '',
        'PubMed': '9043058',
        'DOI': ''},
       {'core': {'iri': 'http://flybase.org/reports/FBrf0205263',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Tanaka et al., 2008, J. Comp. Neurol. 508(5): 711--755',
         'short_form': 'FBrf0205263'},
        'FlyBase': '',
        'PubMed': '18395827',
        'DOI': '10.1002/cne.21692'}]}]

# A query for summary info
import pandas as pd

summary = vc.neo_query_wrapper.get_type_TermInfo(['FBbt_00003686'], summary=True)
summary_tab = pd.DataFrame.from_records(summary)
summary_tab

	label	symbol	id	tags	parents_label	parents_id
0	Kenyon cell		FBbt_00003686	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	supraesophageal ganglion neuron\|mushroom body ...	FBbt_00001366\|FBbt_00007484

# A different method is needed to get info about individual neurons

summary = vc.neo_query_wrapper.get_anatomical_individual_TermInfo(['VFB_jrchjrch'], summary=True)
summary_tab = pd.DataFrame.from_records(summary)
summary_tab

	label	symbol	id	tags	parents_label	parents_id	data_source	accession	templates	dataset	license
0	5-HTPLP01_R - 1324365879		VFB_jrchjrch	Entity\|has_image\|Adult\|Anatomy\|has_neuron_conn...	adult serotonergic PLP neuron	FBbt_00110945	neuprint_JRC_Hemibrain_1point1	1324365879	JRC_FlyEM_Hemibrain\|JRC2018Unisex	Xu2020NeuronsV1point1	https://creativecommons.org/licenses/by/4.0/le...

1.2 The neo_query_wrapper also includes methods for mapping between IDs from different sources.

# Some bodyIDs of HemiBrain neurons from the neuprint DataBase:
bodyIDs = [1068958652, 571424748, 1141631198]
vc.neo_query_wrapper.xref_2_vfb_id(map(str, bodyIDs)) # Note IDs must be strings


    {'1068958652': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjwda'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrch06r9'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch06r9'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjwda'}],
     '571424748': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrch06r6'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjwct'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch06r6'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjwct'}],
     '1141631198': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrch05uz'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjw8r'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch05uz'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjw8r'}]}

# xref queries can be constrained by DB. Results can optionally be reversed

vc.neo_query_wrapper.xref_2_vfb_id(map(str, bodyIDs), db = 'neuprint_JRC_Hemibrain_1point1' , reverse_return=True)

    {'VFB_jrchjw8r': [{'acc': '1141631198',
       'db': 'neuprint_JRC_Hemibrain_1point1'}],
     'VFB_jrchjwct': [{'acc': '571424748',
       'db': 'neuprint_JRC_Hemibrain_1point1'}],
     'VFB_jrchjwda': [{'acc': '1068958652',
       'db': 'neuprint_JRC_Hemibrain_1point1'}]}

2. `vc` direct methods overview

2.1 Methods that take the names of classes in VFB e.g. ’nodulus’ or ‘Kenyon cell’, or simple query expressions using the names of classes and return metadata about the classes or individual neurons.

KC_types = vc.get_subclasses("Kenyon cell", summary=True)
pd.DataFrame.from_records(KC_types)

    Running query: FBbt:00003686
    Query URL: http://owl.virtualflybrain.org/kbs/vfb/subclasses?object=FBbt%3A00003686&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False
    Query results: 37

	label	symbol	id	tags	parents_label	parents_id
0	adult alpha'/beta' Kenyon cell		FBbt_00049834	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	alpha'/beta' Kenyon cell\|adult Kenyon cell	FBbt_00100249\|FBbt_00049825
1	immature Kenyon cell		FBbt_00047995	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	Kenyon cell	FBbt_00003686
2	gamma Kenyon cell		FBbt_00100247	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	Kenyon cell	FBbt_00003686
3	adult Kenyon cell		FBbt_00049825	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult MBp lineage neuron\|Kenyon cell	FBbt_00110577\|FBbt_00003686
4	gamma main Kenyon cell	KCg-m	FBbt_00111061	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	Kenyon cell of main calyx\|adult gamma Kenyon cell	FBbt_00047926\|FBbt_00049828
5	alpha'/beta' anterior-posterior type 1 Kenyon ...		FBbt_00049859	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	alpha'/beta' anterior-posterior type 1 Kenyon ...	FBbt_00049836
6	alpha/beta Kenyon cell		FBbt_00100248	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	cholinergic neuron\|adult Kenyon cell	FBbt_00007173\|FBbt_00049825
7	gamma-s4 Kenyon cell	KCg-s4	FBbt_00049832	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	gamma-s Kenyon cell	FBbt_00049830
8	two-claw Kenyon cell		FBbt_00047997	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	multi-claw Kenyon cell	FBbt_00047994
9	single-claw Kenyon cell		FBbt_00047993	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	Kenyon cell	FBbt_00003686
10	alpha/beta posterior Kenyon cell	KCab-p	FBbt_00110931	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	alpha/beta Kenyon cell	FBbt_00100248
11	alpha'/beta' middle Kenyon cell	KCa'b'-m	FBbt_00100253	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	Kenyon cell of main calyx\|adult alpha'/beta' K...	FBbt_00047926\|FBbt_00049834
12	alpha/beta surface Kenyon cell	KCab-s	FBbt_00110930	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	alpha/beta surface/core Kenyon cell	FBbt_00049838
13	alpha'/beta' anterior-posterior type 1 Kenyon ...	KCa'b'-ap1	FBbt_00049836	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	alpha'/beta' anterior-posterior Kenyon cell	FBbt_00100250
14	larval alpha'/beta' Kenyon cell		FBbt_00049835	Entity\|Neuron\|Anatomy\|Nervous_system\|Cell\|Larv...	larval Kenyon cell\|alpha'/beta' Kenyon cell	FBbt_00049826\|FBbt_00100249
15	gamma-s1 Kenyon cell	KCg-s1	FBbt_00049787	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	gamma-s Kenyon cell	FBbt_00049830
16	gamma-t Kenyon cell	KCg-t	FBbt_00049833	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult gamma Kenyon cell	FBbt_00049828
17	four-claw Kenyon cell		FBbt_00047999	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	multi-claw Kenyon cell	FBbt_00047994
18	alpha'/beta' Kenyon cell		FBbt_00100249	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	Kenyon cell	FBbt_00003686
19	alpha/beta surface/core Kenyon cell		FBbt_00049838	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	Kenyon cell of main calyx\|alpha/beta Kenyon cell	FBbt_00047926\|FBbt_00100248
20	larval Kenyon cell		FBbt_00049826	Entity\|Neuron\|Anatomy\|Nervous_system\|Cell\|Larv...	Kenyon cell\|embryonic/larval neuron	FBbt_00003686\|FBbt_00001446
21	alpha'/beta' anterior-posterior Kenyon cell		FBbt_00100250	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult alpha'/beta' Kenyon cell	FBbt_00049834
22	six-claw Kenyon cell		FBbt_00048001	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	multi-claw Kenyon cell	FBbt_00047994
23	Kenyon cell of main calyx		FBbt_00047926	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult Kenyon cell	FBbt_00049825
24	alpha'/beta' anterior-posterior type 2 Kenyon ...	KCa'b'-ap2	FBbt_00049837	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	alpha'/beta' anterior-posterior Kenyon cell\|Ke...	FBbt_00100250\|FBbt_00047926
25	gamma-s3 Kenyon cell	KCg-s3	FBbt_00049831	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	gamma-s Kenyon cell	FBbt_00049830
26	alpha/beta inner-core Kenyon cell		FBbt_00049111	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	alpha/beta core Kenyon cell	FBbt_00110929
27	gamma dorsal Kenyon cell	KCg-d	FBbt_00110932	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult gamma Kenyon cell	FBbt_00049828
28	alpha/beta outer-core Kenyon cell		FBbt_00049112	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	alpha/beta core Kenyon cell	FBbt_00110929
29	five-claw Kenyon cell		FBbt_00048000	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	multi-claw Kenyon cell	FBbt_00047994
30	alpha/beta core Kenyon cell	KCab-c	FBbt_00110929	Entity\|Neuron\|Adult\|Anatomy\|Nervous_system\|Cel...	alpha/beta surface/core Kenyon cell	FBbt_00049838
31	multi-claw Kenyon cell		FBbt_00047994	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	Kenyon cell	FBbt_00003686
32	adult gamma Kenyon cell		FBbt_00049828	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	gamma Kenyon cell\|adult Kenyon cell	FBbt_00100247\|FBbt_00049825
33	three-claw Kenyon cell		FBbt_00047998	Entity\|Anatomy\|Nervous_system\|Cell\|Neuron\|Class	multi-claw Kenyon cell	FBbt_00047994
34	larval gamma Kenyon cell		FBbt_00049827	Entity\|Neuron\|Anatomy\|Nervous_system\|Cell\|Larv...	larval Kenyon cell\|gamma Kenyon cell	FBbt_00049826\|FBbt_00100247
35	gamma-s2 Kenyon cell	KCg-s2	FBbt_00049788	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	gamma-s Kenyon cell	FBbt_00049830
36	gamma-s Kenyon cell		FBbt_00049830	Entity\|Adult\|Anatomy\|Nervous_system\|Cell\|Neuro...	adult gamma Kenyon cell	FBbt_00049828

2.2 Methods for querying connectivity

Please see Connectivity Notebook for examples.