VFB Content Report

An auto generated report detailing the current types and quantity of images and annotations currently publicly available on VFB. This will update after a new data release.
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VFB Content Report 2024-12-03

Report of content found at http://pdb.virtualflybrain.org on Tue, 03 Dec 2024 01:03:58

Ontology Content

Anatomy Classes Publications
All Terms 28239 2275
All Nervous System Parts 21599 1783
All Neurons 17932 1494
Characterised Neurons 6608 1492
Provisional Neurons 11324 19
All Nervous System Regions 1434 253
Synaptic Neuropils 625 144
Neuron Projection Bundles 599 127
Cell Body Rinds 132 8
Sense Organs 861 160

157989 formal assertions, of which 68803 are SubClassOf assertions and 89186 are other relationship types

144003 formal assertions on nervous system components, of which 60735 are SubClassOf assertions and 83268 are other relationship types

Image Content
(excludes hemibrain v1.0.1)

358717 total images from 111 datasets
277415 single neuron images of 13921 cell types
43686 images of expression patterns of 16876 drivers
2736 images of expression patterns of 579 split combinations
61163 images of expression pattern fragments of 5105 drivers

Annotations

149431 annotations recording 3279 types of anatomical structure that 12744 specific driver lines are expressed in.
136270 annotations recording 2447 parts of the nervous system that 11565 specific driver lines are expressed in.
12802 annotations recording 1614 types of neuron that 2903 specific driver lines are expressed in.
4633 annotations recording 608 types of neuron that 1167 specific split combinations are expressed in.

Connectivity

Neuron Number of Neurons Input/Output Entity Number of Entities Connections
Any neuron (individuals) 244974 Any neuron (individuals) 244974 18158951
Any neuron (individuals) 22585 Region (individuals) 218 299683
Any neuron (classes) 1661 Muscle (classes) 233 2144
Any neuron (classes) 773 Sense organ (classes) 433 534

Content by Template
(excludes hemibrain v1.0.1)

Template Name Datasets Images Single Neurons EM Neurons Full Expression Patterns Split Expression Patterns Partial Expression Patterns Painted domains
Adult Head (McKellar2020) 1 18 0 0 0 0 0 0
L1 larval CNS ssTEM - Cardona/Janelia 24 5019 5019 5019 0 0 0 0
JRC2018UnisexVNC 22 44363 25789 2029 8314 625 10240 23780
adult brain template Ito2014 1 75 1 0 0 0 0 75
Adult T1 Leg (Kuan2020) 2 678 464 0 0 0 0 4
adult brain template JFRC2 21 41940 16318 0 25272 600 16127 58
adult VNS template - Court2018 9 3194 1 0 3171 480 0 21
JRC_FlyEM_Hemibrain 2 22701 22588 22587 0 0 0 114
JRC2018Unisex 69 291993 237349 167142 31655 1632 38796 46
L3 CNS template - Wood2018 3 12496 8639 0 0 0 12178 255